TMAtools

The goal of TMAtools is to facilitate the efficient and reproducible processing and integration of TMA data at scale.

Documentation and examples are available at edgeresearch-ca.github.io/TMAtools.

Overview

TMAtools overview fig.

Installation

You can install the development version of TMAtools from GitHub with:

# install.packages("remotes")
remotes::install_github("EDGEResearch-CA/TMAtools")

Example

This is a basic example which shows you how to solve a common problem:

library(TMAtools)
## basic example code
tma_dirs <- c(
 system.file("extdata", "tma1", package = "TMAtools"),
 system.file("extdata", "tma2", package = "TMAtools")
)
# Run the TMAtools pipeline
tmatools(
  tma_dirs = tma_dirs,
  output_dir = "tmatools_output"
)